Package: bixverse
Title: Rust-accelerated standard bioinformatics, computational biology
        workflows
Version: 0.8.3
Authors@R: 
    c(
      person(
        given = "Gregor", 
        family = "Lueg", 
        email = "gregorlueg@me.com", 
        role = c("aut", "cre")
      ),
      person(
        given = "Liesbeth", 
        family = "Francois",
        email = "francois.liesbeth@gmail.com", 
        role = c("ctb")
      ),
      person(
        given = "Andrew", 
        family = "Skelton", 
        email = "Ajskelton@proton.me", 
        role = c("ctb")
      ),
      person(
        given = "Grant", 
        family = "Neilson", 
        email = "grant.neilson5@gmail.com", 
        role = c("ctb")
      )
    )
Description: Your favourite methods used in bioinformatics and
        computational biology made VERY fast via Rust. Contains various
        gene set enrichment methods, graph- based methods,
        co-expression module detection and much more. Additionally, has
        now a single cell analysis suite, enabling million cell scale
        analysis on local compute.
License: MIT + file LICENSE
Encoding: UTF-8
URL: https://gregorlueg.github.io/bixverse
Roxygen: list(markdown = TRUE)
Config/rextendr/version: 0.5.0
biocViews:
Imports: arrow, checkmate, cli, data.table, DBI, dplyr, duckdb (>=
        1.5.5), fastcluster, ggplot2, igraph, jsonlite, lifecycle,
        magrittr, manifoldsR (>= 0.4.0), matrixStats, Matrix, mirai,
        patchwork, purrr, R.utils, R6, rextendr, rhdf5, rlang, S7,
        stringr, zeallot
Suggests: airway, biomaRt, BiocParallel, bixverse.plots, cluster,
        e1071, edgeR, fgsea, GSVA, infotheo, knitr, limma,
        microbenchmark, mitch, methods, ontologyIndex,
        ontologySimilarity, qs2, quarto, singscore, scrapper,
        SingleCellExperiment, SummarizedExperiment, StatMatch, Seurat,
        tictoc, tinytest, furrr, future
SystemRequirements: Cargo (Rust's package manager), rustc >= 1.90, xz
Depends: R (>= 4.2)
LazyData: true
Config/roxygen2/version: 8.1.1
Config/pak/sysreqs: cmake libglpk-dev libicu-dev libxml2-dev libssl-dev
        xz-utils libclang-dev
Repository: https://gregorlueg.r-universe.dev
Date/Publication: 2026-10-27 21:38:12 UTC
RemoteUrl: https://github.com/GregorLueg/bixverse
RemoteRef: v0.8.3
RemoteSha: 5699a0506c5922b0e8f8757f35623c4c14c8db63
NeedsCompilation: yes
Packaged: 2026-10-27 22:21:51 UTC; root
Author: Gregor Lueg [aut, cre],
  Liesbeth Francois [ctb],
  Andrew Skelton [ctb],
  Grant Neilson [ctb]
Maintainer: Gregor Lueg <gregorlueg@me.com>